##contig=<ID=chrY,length=59373566>
##reference=file:///newstorage/home/adnan/Genomics/Genomes/Indexes/star/human/genome.fa
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Sample1
chrM	146	.	T	C	6797.77	.	AC=2;AF=1.00;AN=2;DP=134;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=34.24;SOR=0.886	GT:AD:DP:GQ:PL	1/1:0,134:134:99:6826,469,0
chrM	150	.	T	C	6657.77	.	AC=2;AF=1.00;AN=2;DP=130;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.63;SOR=1.127	GT:AD:DP:GQ:PL	1/1:0,130:130:99:6686,422,0
chrM	152	.	T	C	5780.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.183;ClippingRankSum=0.000;DP=131;ExcessHet=3.0103;FS=3.849;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=29.09;ReadPosRankSum=1.740;SOR=0.849	GT:AD:DP:GQ:PL	1/1:1,130:131:99:5809,353,0
chrM	195	.	C	T	4560.77	.	AC=2;AF=1.00;AN=2;BaseQRankSum=3.317;ClippingRankSum=0.000;DP=117;ExcessHet=3.0103;FS=2.994;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=32.93;ReadPosRankSum=2.438;SOR=0.150	GT:AD:DP:GQ:PL	1/1:2,115:117:99:4589,282,0
chrM	302	.	AC	A	706.73	.	AC=2;AF=1.00;AN=2;BaseQRankSum=-0.764;ClippingRankSum=0.000;DP=137;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQRankSum=0.000;QD=25.24;ReadPosRankSum=2.234;SOR=4.407	GT:AD:DP:GQ:PL	1/1:2,26:28:32:744,32,0
chrM	410	.	A	T	5991.77	.	AC=2;AF=1.00;AN=2;DP=148;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=30.05;SOR=5.283	GT:AD:DP:GQ:PL	1/1:0,148:148:99:6020,445,0
chrM	495	.	AC	A	1435.73	.	AC=2;AF=1.00;AN=2;DP=241;ExcessHet=3.0103;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=60.00;QD=31.91;SOR=1.714	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1473,137,0